The expression data are obtained by FANTOM5 project with CAGE (Cap Analysis of Gene Expression) technique in multiple cell lines and tissues and primary cells from different donors. Cell-type specific expression profiles are represented in corresponding sections “CELL_LINE”, “PRIMARY_CELL” and “TISUUE”. Section “TIMECOURSE” provides information on gene expression in time courses after biological stimuli. Additionally, section “FRACTIONATION” contains information on gene expression from cellular fractionation samples.